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Retrieve Substance IDs (SIDs) from PubChem

get_sids.Rd

This function sends a request to PubChem to retrieve Substance IDs (SIDs) for a given identifier. It returns a tibble (data frame) with the provided identifier and the corresponding SIDs.

Usage

get_sids(
  identifier,
  namespace = "cid",
  domain = "compound",
  searchtype = NULL,
  options = NULL
)

Arguments

identifier

A numeric or character vector specifying the identifiers for the request.

namespace

A character string specifying the namespace for the request. Default is 'cid'.

domain

A character string specifying the domain for the request. Default is 'compound'.

searchtype

A character string specifying the search type. Default is NULL.

options

Additional arguments passed to get_json.

Value

A tibble (data frame) where each row corresponds to a provided identifier and its SID. The tibble has columns 'CID' and 'SID'.

Examples

get_sids(
  identifier = "aspirin",
  namespace = "name"
)
#> # A tibble: 386 × 3
#>    Compound   CID     SID
#>    <chr>    <dbl>   <dbl>
#>  1 aspirin   2244    4594
#>  2 aspirin   2244   87798
#>  3 aspirin   2244  476106
#>  4 aspirin   2244  602429
#>  5 aspirin   2244  829042
#>  6 aspirin   2244  832958
#>  7 aspirin   2244  840714
#>  8 aspirin   2244 3135921
#>  9 aspirin   2244 5261264
#> 10 aspirin   2244 7847177
#> # ℹ 376 more rows